Publications

Publications in 2026:

1.        D'Amico, S., Dar, U., Eckberg, K., Weisser, I., Hossain, C., Bronstein, R., & Aboudehen, K. (2026). Loss of Snhg5 disrupts cell-cycle regulation without altering cystogenesis in a mouse model of polycystic kidney disease. Scientific reports, 16(1), 4869. https://doi.org/10.1038/s41598-026-35234-w

2.        Piret, S. E., Aboudehen, K., & Agrawal, S. (2026). Evolving Understanding of RNA Biology in Kidney Disease. Journal of the American Society of Nephrology : JASN, 37(5), 1084–1086. https://doi.org/10.1681/ASN.0000001012

3.        Agrawal, S., Das, M. K., Kaur, T., Lokupathirage, S. M. W., Reilly, C., Yarram, M., & Govindarajan, R. (2026). Cardioprotective SNPs in SLC28A3 and lncRNA SLC28A3-AS1 result in transcriptional changes and alternative splicing to reduce doxorubicin cytotoxicity. Human molecular genetics, 35(4), ddag002. https://doi.org/10.1093/hmg/ddag002

4.        Novaes, A. S., Felizardo, R. J. F., Camara, N. O. S., Agrawal, S., & Boim, M. A. (2026). Extracellular Vesicles Facilitate the Crosstalk Between High Glucose-Stimulated Mesangial Cells and Healthy Podocytes to Mediate Injury Responses. International journal of molecular sciences, 27(4), 1927. https://doi.org/10.3390/ijms27041927

5.        Gowthaman, Y., Estrada, C. C., Kim, J., Guo, Y., Bronstein, R., Salant, D. J., He, J. C., D'Agati, V. D., & Mallipattu, S. K. (2026). Podocyte-Specific Deletion of STAT3 in Krüppel-Like Factor 4-Related Experimental Podocytopathy. Journal of the American Society of Nephrology : JASN, 37(3), 490–503. https://doi.org/10.1681/ASN.0000000841

6.        Chinthalapudi, S., Mallipattu, S. K., Yurovsky, A., & Ma, T. (2026). A Novel Approach to Zero-Shot Drug-Drug Interaction Prediction Enabled by EHR-Augmented Knowledge Graphs. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science, 2026, 107–116.

7.        Cintron Pregosin, N., Guo, Y., Dang, E. T., Gujarati, N. A., Revelo, M. P., Sheikh, F., Hennigar, R. A., Salant, D. J., D'Agati, V. D., & Mallipattu, S. K. (2026). Rapid podocyte loss in murine models triggers the formation of podocyte-parietal epithelial cell intercellular bridges. American journal of physiology. Renal physiology, 330(2), F223–F237. https://doi.org/10.1152/ajprenal.00292.2025

8.        Tajerian, A., Shafi, T., Zhang, J., Khan, S., Mallipattu, S. K., & Kalogeropoulos, A. P. (2026). Residual Kidney Function and Response of Left Ventricular Mass to Intensive Hemodialysis: The Frequent Hemodialysis Network Trials. Kidney360, 7(2), 344–352. https://doi.org/10.34067/KID.0000000987

9.        Mallipattu S. K. (2025). Mineralocorticoid receptor blockade quiesces parietal epithelial cell activation. Kidney international, 108(6), 989–990. https://doi.org/10.1016/j.kint.2025.08.016

10.  Neyra, J. A., Legrand, M., Tidswell, M. A., Al-Khafaji, A., Galphin, C., Rains, R., Davison, D., Tolwani, A., Chen, J. T., Bender, W. S., Busse, L. W., Meena, N. K., DellaVolpe, J., Williams, G. W., Kashani, K. B., Gunnerson, K. J., McMahon, B. A., Eaton, J., Khan, S., Kohli-Seth, R., … Kellum, J. A. (2026). Polymyxin B haemoadsorption in endotoxic septic shock (Tigris): a multicentre, open-label, Bayesian, randomised, controlled, phase 3 trial. The Lancet. Respiratory medicine, 14(5), 443–452. https://doi.org/10.1016/S2213-2600(26)00047-0

11.  Delinois, L. J., DiMartino, S., & Piret, S. E. (2026). The Physiology and Pathophysiology of Branched-Chain Amino Acids in the Kidney. Nephron, 1–9. Advance online publication. https://doi.org/10.1159/000551377

12.  Rahman, S., Israel, A. R., Ryan, A., & Williams, R. M. (2026). Screening molecular recognition element-based SWCNT optical sensors for the inflammatory cytokine TNF-α. Biosensors & bioelectronics, 310, 118861. https://doi.org/10.1016/j.bios.2026.118861

13.  Israel, A. R., Kim, Y., Arnaout, A., Thahsin, M., Ahmed, Y., Cohen, Z., Ryan, A., Rahman, S., Kim, M., & Williams, R. M. (2026). Optical Spectral Fingerprinting Enables Sensitive Detection of Anthracycline Chemotherapeutics in Synthetic Clinical Biofluids. Nano letters, 10.1021/acs.nanolett.6c01777. Advance online publication. https://doi.org/10.1021/acs.nanolett.6c01777

14.  Stefoni, M. C., Yafai, H., Ryan, A. K., Israel, A., & Williams, R. M. (2026). Aptamer-Functionalized SWCNT Optical Sensors for Selective and Robust Dopamine Detection in Physiological Media. ACS applied nano materials, 9(19), 8950–8960. https://doi.org/10.1021/acsanm.6c00982

15.  Ryan, A. K., Parveen, S., Cohen, Z., Israel, A., & Williams, R. M. (2026). Antibody-conjugated species-sorted single-walled carbon nanotubes for multiplexed cytokine sensing. Communications materials, 10.1038/s43246-026-01169-y. Advance online publication. https://doi.org/10.1038/s43246-026-01169-y

16.  Israel, A. R., Kim, Y., Arnaout, A., Thahsin, M., Ahmed, Y., Cohen, Z., Ryan, A., Rahman, S., Kim, M., & Williams, R. M. (2026). Optical Spectral Fingerprinting Enables Sensitive Detection of Anthracycline Chemotherapeutics in Synthetic Clinical Biofluids. bioRxiv : the preprint server for biology, 2026.04.08.717324. https://doi.org/10.64898/2026.04.08.717324

17.  Ryan, A. K., Israel, A., Stefoni, M. C., Ferraz, C., & Williams, R. M. (2026). Rational Design of Optical Single-Walled Carbon Nanotube-Based Nanosensors with Biological Recognition Elements. Advanced sensor research, 5(3), e00076. https://doi.org/10.1002/adsr.202500076

18.  Stefoni, M. C., Yafai, H., Ryan, A., Israel, A., & Williams, R. M. (2026). Selective and robust dopamine detection is enabled by aptamer-SWCNT optical sensors in physiological media. bioRxiv : the preprint server for biology, 2026.02.12.705330. https://doi.org/10.64898/2026.02.12.705330

19.  Israel, A. R., Cohen, Z., Rahman, N., Vasylaki, A., Ryan, A., Rahman, S., Ghosh, P., & Williams, R. M. (2026). High-throughput SWCNT NIR-II screening enables cell and in vivo applications. bioRxiv : the preprint server for biology, 2026.01.27.701967. https://doi.org/10.64898/2026.01.27.701967



Publications in 2025:

1.        Ramalingam, H., Alvarez, J., Flaten, A., Cobo-Stark, P., Foster, N., Grilli, E., Lakhia, R., Aboudehen, K., Carroll, T., & Patel, V. (2025). An RNA transmethylation pathway governs kidney nephrogenic potential. Nature communications, 16(1), 4930. https://doi.org/10.1038/s41467-025-60097-6

2.        Das, M. K., Webb, A., Yarram, M., Reilly, C., Punepalle, L., Bryant, C., Govindarajan, R., Moore, C. L., & Agrawal, S. (2025). RNA Alternative Splicing and Polyadenylation and Regulation of the Glomerular Filtration Barrier. Journal of the American Society of Nephrology : JASN, 36(11), 2145–2163. https://doi.org/10.1681/ASN.0000000748

3.        Estrada, C. C., Wilson, C., Gujarati, N., Ahmed, S., Bronstein, R., Daehn, I. S., Revelo, M. P., Guo, Y., & Mallipattu, S. K. (2025). Induction of plasmalemmal vesicle-associated protein exacerbates glomerular endothelial injury in thrombotic microangiopathy. American journal of physiology. Renal physiology, 328(2), F190–F203. https://doi.org/10.1152/ajprenal.00283.2024

4.        Bronstein, R., Revelo, M. P., Sheikh, F., Haley, J. D., D'Agati, V., Salant, D. J., He, J. C., Guo, Y., & Mallipattu, S. K. (2025). Fosl2 regulates the transition from parietal epithelial cells to myofibroblasts in the kidney. bioRxiv : the preprint server for biology, 2025.11.10.687667. https://doi.org/10.1101/2025.11.10.687667

5.        Mallipattu S. K. (2025). Mineralocorticoid receptor blockade quiesces parietal epithelial cell activation. Kidney international, 108(6), 989–990. https://doi.org/10.1016/j.kint.2025.08.016

6.        Meah, A., Gujarati, N. A., D'Agati, V. D., Revelo, M. P., Mallipattu, S. K., & Wang, J. (2025). Characterization and classification of chronic kidney disease by spatial MIST and deep learning algorithm. American journal of physiology. Renal physiology, 329(6), F820–F833. https://doi.org/10.1152/ajprenal.00265.2025

7.        Allison, C. V., Patel, P. S., Xuanyuan, Q., Stayton, A., Silvaroli, J. A., Karel, I. Z., Thorson, V. C., Sloane, G., Thailammanal, H. J., Scindia, Y., Coss, C. C., Zepeda-Orozco, D., Rao, R., Bolisetty, S., Mallipattu, S. K., Humphreys, B. D., Bajwa, A., Pabla, N. S., & Kim, J. (2025). Androgens Drive SOX9 Upregulation in Injured Proximal Tubular Cells. bioRxiv : the preprint server for biology, 2025.10.23.684153. https://doi.org/10.1101/2025.10.23.684153

8.        Anzalone, A. J., Krichevsky, S., Yoo, Y. J., Wilkins, K. J., Alakwaa, F., Liu, F., Sakhuja, A., Saltz, J. H., Han, Y., Zhu, R. L., Setoguchi, S., Kane-Gill, S. L., Mallipattu, S. K., He, Y., Ellison, D. H., Byrd, J. B., Parikh, C. R., Saran, R., Moffitt, R. A., Koraishy, F. M., … National Clinical Cohort Collaborative (N3C) Consortium and the RECOVER EHR Cohort (2025). The Association of Long COVID and CKD: Findings from the National Clinical Cohort Collaborative. Clinical journal of the American Society of Nephrology : CJASN, 20(10), 1323–1340. https://doi.org/10.2215/CJN.0000000773

9.        Piret, S. E., DiMartino, S., Hanubal, M., Davis, M., Wang, J., Bahadur, T., Rath, A., Gujarati, N. A., Frimpong, B. O., Bronstein, R., Revelo, M. P., Guo, Y., & Mallipattu, S. K. (2025). Krüppel-Like Factor 6 Induces RNA Polymerase II Subunit RPB1 to Promote Kidney Injury. Journal of the American Society of Nephrology : JASN, 36(10), 1914–1927. https://doi.org/10.1681/ASN.0000000722

10.  Martinez, S. A., Karel, I. Z., Silvaroli, J. A., Ahmed, E., Kim, J. Y., Stayton, A., Patel, P. S., Afjal, M. A., Horton, T., Bohmer, M., Vanichapol, T., Sander, V., Andrade, G. M., Allison, C. V., Mondal, M., Thorson, V. C., Partey, A., Nimkar, K., Williams, V., Quimby, J., Mallipattu, S.K.,  … Pabla, N. S. (2025). Resazurin dye is an in vivo sensor of kidney tubular function. Kidney international, 107(3), 508–520. https://doi.org/10.1016/j.kint.2024.12.008

11.  Min, L., Chen, Y., Liu, R., Li, Z., Gu, L., Mallipattu, S., Das, B., Lee, K., He, J. C., & Zhong, F. (2025). Targeting Krüppel-Like Factor 2 as a Novel Therapy for Glomerular Endothelial Cell Injury in Diabetic Kidney Disease. Journal of the American Society of Nephrology : JASN, 36(2), 193–204. https://doi.org/10.1681/ASN.0000000000000498

12.  DiMartino, S., Revelo, M. P., Mallipattu, S. K., & Piret, S. E. (2025). Activation of branched chain amino acid catabolism protects against nephrotoxic acute kidney injury. American journal of physiology. Renal physiology, 328(1), F152–F163. https://doi.org/10.1152/ajprenal.00260.2024

13.  ultrasound analysis: correlating imaging reports with chronic kidney disease diagnosis. Renal failure, 47(1), 2539938. https://doi.org/10.1080/0886022X.2025.2539938

14.  Anzalone, A. J., Krichevsky, S., Yoo, Y. J., Wilkins, K. J., Alakwaa, F., Liu, F., Sakhuja, A., Saltz, J. H., Han, Y., Zhu, R. L., Setoguchi, S., Kane-Gill, S. L., Mallipattu, S. K., He, Y., Ellison, D. H., Byrd, J. B., Parikh, C. R., Saran, R., Moffitt, R. A., Koraishy, F. M., … National Clinical Cohort Collaborative (N3C) Consortium and the RECOVER EHR Cohort (2025). The Association of Long COVID and CKD: Findings from the National Clinical Cohort Collaborative. Clinical journal of the American Society of Nephrology : CJASN, 20(10), 1323–1340. https://doi.org/10.2215/CJN.0000000773

15.  Wang, W., Zhu, W., Hajagos, J., Fochtmann, L., & Koraishy, F. M. (2025). Classification and Regression Trees analysis identifies patients at high risk for kidney function decline following hospitalization. PloS one, 20(1), e0317558. https://doi.org/10.1371/journal.pone.0317558

16.  Kretli Zanetti, J., Stefoni, M. C., Ferraz, C., Ryan, A., Israel, A., & Williams, R. M. (2025). A near-infrared fluorescent aptananosensor enables selective detection of the stress hormone cortisol in artificial cerebrospinal fluid. Sensors & diagnostics, 4(12), 1103–1113. https://doi.org/10.1039/d5sd00085h

Publications in 2024:

  1. Endotoxemia Correlates with Kidney Function and Length of Stay in Critically Ill Patients. Piret SE, Khan S, Fairuz F, Gholami S, Davis M, Kim CK, Espinoza M, Foster D, Kellum JA, Ahmad S, Kalogeropoulos AP, Mallipattu SK.Blood Purif. 2023 Nov 2:1-10. doi: 10.1159/000534107. Online ahead of print.PMID: 37918364
  2. Stamellou E*, Agrawal S*, Siegerist F, Buse M, Kuppe C, Lange T, Buhl EM, Alam J, Strieder T, Boor P, Ostendorf T, Gröne HJ, Floege J, Smoyer WE, Endlich N, Moeller MJ. Inhibition of the glucocorticoid receptor attenuates proteinuric kidney diseases in multiple species. Nephrol Dial Transplant. 2024 Jun 28;39(7):1181-1193. doi: 10.1093/ndt/gfad254. PubMed PMID: 38037533; PubMed Central PMCID: PMC11210988. *shared authorship
  3. Bhayana S, Dougherty JA, Kamigaki Y, Agrawal S, Wijeratne S, Fitch J, Waller AP, Wolfgang KJ, White P, Kerlin BA, Smoyer WE. Glucocorticoid- and pioglitazone-induced proteinuria reduction in experimental NS both correlate with glomerular ECM modulation. iScience. 2024 Jan 19;27(1):108631. doi: 10.1016/j.isci.2023.108631. eCollection 2024 Jan 19. PubMed PMID: 38188512; PubMed Central PMCID: PMC10770536.
  4. A Case Demonstration of the Open Health Natural Language Processing Toolkit From the National COVID-19 Cohort Collaborative and the Researching COVID to Enhance Recovery Programs for a Natural Language Processing System for COVID-19 or Postacute Sequelae of SARS CoV-2 Infection: Algorithm Development and Validation Andrew Wen # 1 2, Liwei Wang # 1 2, Huan He 1, Sunyang Fu 1 2, Sijia Liu 1, David A Hanauer 3, Daniel R Harris 4, Ramakanth Kavuluru 5, Rui Zhang 6, Karthik Natarajan 7, Nishanth P Pavinkurve 7, Janos Hajagos 8, Sritha Rajupet 8, Veena Lingam 8, Mary Saltz 8, Corey Elowsky 8, Richard A Moffitt 8, Farrukh M Koraishy 9, Matvey B Palchuk 10, Jordan Donovan 10, Lora Lingrey 10, Garo Stone-DerHagopian 10, Robert T Miller 11, Andrew E Williams 11 12, Peter J Leese 13, Paul I Kovach 13, Emily R Pfaff 13, Mikhail Zemmel 14, Robert D Pates 14, Nick Guthe 15, Melissa A Haendel 16, Christopher G Chute 17, Hongfang Liu 1 2; National COVID Cohort Collaborative 18; RECOVER Initiative 18

Publications in 2023:

  1. Roles of Krüppel-like transcription factors KLF6 and KLF15 in proximal tubular metabolism. Piret SE.Nephron. 2023 Jun 1. doi: 10.1159/000531336. Online ahead of print.PMID: 37263229 Free article. Review.
  2. Dialysis resource allocation in critical care: the impact of the COVID-19 pandemic and the promise of big data analytics. Koraishy FM, Mallipattu SK.Front Nephrol. 2023 Oct 26;3:1266967. doi: 10.3389/fneph.2023.1266967. eCollection 2023.PMID: 37965069 Free PMC article. Review.
  3. The association of post-traumatic stress disorder with glomerular filtration rate decline. Koraishy FM, Cohen BE, Scherrer JF, Whooley M, Hajagos J, Robinson-Cohen C, Hou W.Nephrology (Carlton). 2023 Mar;28(3):181-186. doi: 10.1111/nep.14140. Epub 2023 Jan 20.PMID: 36594760
  4. Geographic and Temporal Trends in COVID-Associated Acute Kidney Injury in the National COVID Cohort Collaborative. Yoo YJ, Wilkins KJ, Alakwaa F, Liu F, Torre-Healy LA, Krichevsky S, Hong SS, Sakhuja A, Potu CK, Saltz JH, Saran R, Zhu RL, Setoguchi S, Kane-Gill SL, Mallipattu SK, He Y, Ellison DH, Byrd JB, Parikh CR, Moffitt RA, Koraishy FM; N3C and RECOVER Consortia.Clin J Am Soc Nephrol. 2023 Aug 1;18(8):1006-1018. doi: 10.2215/CJN.0000000000000192. Epub 2023 Jun 5.PMID: 37131278
  5. Single-Cell Spatial MIST for Versatile, Scalable Detection of Protein Markers. Meah A, Vedarethinam V, Bronstein R, Gujarati N, Jain T, Mallipattu SK, Li Y, Wang J.Biosensors (Basel). 2023 Aug 27;13(9):852. doi: 10.3390/bios13090852.PMID: 37754086 Free PMC article.
  6. Bayesian methods: a potential path forward for sepsis trials.Tomlinson G, Al-Khafaji A, Conrad SA, Factora FNF, Foster DM, Galphin C, Gunnerson KJ, Khan S, Kohli-Seth R, McCarthy P, Meena NK, Pearl RG, Rachoin JS, Rains R, Seneff M, Tidswell M, Walker PM, Kellum JA.Crit Care. 2023 Nov 8;27(1):432. doi: 10.1186/s13054-023-04717-x.PMID: 37940985 Free PMC article.
  7. Ablation of Long Noncoding RNA Hoxb3os Exacerbates Cystogenesis in Mouse Polycystic Kidney Disease. Weisser I, Eckberg K, D'Amico S, Buttram D, Aboudehen K.J Am Soc Nephrol. 2023 Nov 13. doi: 10.1681/ASN.0000000000000265. Online ahead of print.PMID: 37953472
  8. Increased renal elimination of endogenous and synthetic pyrimidine nucleosides in concentrative nucleoside transporter 1 deficient mice. Persaud AK, Bernier MC, Massey MA, Agrawal S, Kaur T, Nayak D, Xie Z, Weadick B, Raj R, Hill K, Abbott N, Joshi A, Anabtawi N, Bryant C, Somogyi A, Cruz-Monserrate Z, Amari F, Coppola V, Sparreboom A, Baker SD, Unadkat JD, Phelps MA, Govindarajan R.Nat Commun. 2023 Jun 1;14(1):3175. doi: 10.1038/s41467-023-38789-8.PMID: 37264059 Free PMC article.
  9. Inhibition of the glucocorticoid receptor attenuates proteinuric kidney diseases in multiple species. Stamellou E, Agrawal S, Siegerist F, Buse M, Kuppe C, Lange T, Buhl EM, Alam J, Strieder T, Boor P, Ostendorf T, Gröne HJ, Floege J, Smoyer WE, Endlich N, Moeller MJ.Nephrol Dial Transplant. 2023 Nov 30:gfad254. doi: 10.1093/ndt/gfad254. Online ahead of print.PMID: 38037533
  10. Glucocorticoid- and Pioglitazone-Induced Proteinuria Reduction in Experimental Nephrotic Syndrome Both Correlate with Glomerular ECM Modulation Sagar Bhayan, Julie A. Dougherty, Yu Kamigaki, Shipra Agrawal, Saranga Wijeratne, James Fitch, Amanda P. Waller, Katelyn J. Wolfgang, Peter White, Bryce A. Kerlin, William E. Smoyer
  11. Transcriptional regulation of proximal tubular metabolism in acute kidney injury. Piret SE, Mallipattu SK.Pediatr Nephrol. 2023 Apr;38(4):975-986. doi: 10.1007/s00467-022-05748-2. Epub 2022 Oct 1.PMID: 36181578 Review.
  12. Podocyte-Parietal Epithelial Cell Interdependence in Glomerular Development and Disease. Bronstein R, Pace J, Gowthaman Y, Salant DJ, Mallipattu SK.J Am Soc Nephrol. 2023 May 1;34(5):737-750. doi: 10.1681/ASN.0000000000000104. Epub 2023 Feb 16.PMID: 36800545 Review.
  13. Mallipattu SK. The loss of profilin1 is catastrophic to podocytes. J Clin Invest. 2023 Dec 15;133(24). doi: 10.1172/JCI175594. PubMed PMID: 38099501; PubMed Central PMCID: PMC10721137.
  14. Persaud AK, Bernier MC, Massey MA, Agrawal S, Kaur T, Nayak D, Xie Z, Weadick B, Raj R, Hill K, Abbott N, Joshi A, Anabtawi N, Bryant C, Somogyi A, Cruz-Monserrate Z, Amari F, Coppola V, Sparreboom A, Baker SD, Unadkat JD, Phelps MA, Govindarajan R. Increased renal elimination of endogenous and synthetic pyrimidine nucleosides in concentrative nucleoside transporter 1 deficient mice. Nat Commun. 2023 Jun 1;14(1):3175. doi: 10.1038/s41467-023-38789-8. PubMed PMID: 37264059; PubMed Central PMCID: PMC10235067.


Publications in 2022:

  1. Gras-Peña R, Danzl NM, Khosravi-Maharlooei M, Campbell SR, Ruiz AE, Parks CA, Suen Savage WM, Holzl MA, Chatterjee D, Sykes M. Human stem cell-derived thymic epithelial cells enhance human T-cell development in a xenogeneic thymus. J Allergy Clin Immunol. 2022 May;149(5):1755-1771.
  2. Nauman G, Danzl NM, Lee J, Borsotti C, Madley R, Fu J, Hölzl MA, Dahmani A, Dorronsoro Gonzalez A, Chavez É, Campbell SR, Yang S, Satwani P, Liu K, Sykes M. Defects in Long-Term APC Repopulation Ability of Adult Human Bone Marrow Hematopoietic Stem Cells (HSCs) Compared with Fetal Liver HSCs. J Immunol. 2022 Apr 1;208(7):1652-1663.
  3. COVID-19-associated AKI in hospitalized US patients: incidence, temporal trends, geographical distribution, risk factors and mortality. Masthead; Yoo YJ, Wilkins KJ, Alakwaa F, Liu F, Torre-Healy LA, Krichevsky S, Hong SS, Sakhuja A, Potu CK, Saltz JH, Saran R, Zhu RL, Setoguchi S, Kane-Gill SL, Mallipattu SK, He Y, Ellison DH, Byrd JB, Parikh CR, Moffitt RA, Koraishy FM. medRxiv. 2022 Sep 2:2022.09.02.22279398. doi: 10.1101/2022.09.02.22279398. Preprint. PMID: 36093355 Free PMC article.
  4. Endothelial-specific loss of Krüppel-Like Factor 4 triggers complement-mediated endothelial injury. Estrada CC, Cardona S, Guo Y, Revelo MP, D'Agati VD, Koganti S, Devaraj J, He JC, Heeger PS, Mallipattu SK. Kidney Int. 2022 Jul;102(1):58-77. doi: 10.1016/j.kint.2022.03.025. Epub 2022 Apr 26. PMID: 35483525
  5. Diabetes medications and associations with Covid-19 outcomes in the N3C database: A national retrospective cohort study. Bramante CT, Johnson SG, Garcia V, Evans MD, Harper J, Wilkins KJ, Huling JD, Mehta H, Alexander C, Tronieri J, Hong S, Kahkoska A, Alamgir J, Koraishy F, Hartman K, Yang K, Abrahamsen T, Stürmer T, Buse JB; N3C core authors. PLoS One. 2022 Nov 17;17(11):e0271574. doi: 10.1371/journal.pone.0271574. eCollection 2022. PMID: 36395143 Free PMC article.
  6. Polygenic association of glomerular filtration rate decline in world trade center responders. Koraishy FM, Mann FD, Waszczuk MA, Kuan PF, Jonas K, Yang X, Docherty A, Shabalin A, Clouston S, Kotov R, Luft B. BMC Nephrol. 2022 Oct 28;23(1):347. doi: 10.1186/s12882-022-02967-5. PMID: 36307804 Free PMC article.
  7. Alternatively Spliced Landscape of PPARγ mRNA in Podocytes Is Distinct from Adipose Tissue.Bryant C, Webb A, Banks AS, Chandler D, Govindarajan R, Agrawal S. Cells. 2022 Nov 1;11(21):3455. doi: 10.3390/cells11213455. PMID: 36359851 Free PMC article.
  8. Adriamycin-Induced Nephropathy is Robust in N and Modest in J Substrain of C57BL/6. Bryant C, Cianciolo R, Govindarajan R, Agrawal S. Front Cell Dev Biol. 2022 Jun 16;10:924751. doi: 10.3389/fcell.2022.924751. eCollection 2022. PMID: 35784478 Free PMC article.
  9. Selective modulator of nuclear receptor PPARγ with reduced adipogenic potential ameliorates experimental nephrotic syndrome. Bryant C, Rask G, Waller AP, Webb A, Galdino-Pitta MR, Amato AA, Cianciolo R, Govindarajan R, Becknell B, Kerlin BA, Neves FAR, Fornoni A, Agrawal S. iScience. 2022 Feb 28;25(4):104001. doi: 10.1016/j.isci.2022.104001. eCollection 2022 Apr 15. PMID: 35310946 Free PMC article.
  10. Multiomics analysis reveals that hepatocyte nuclear factor 1β regulates axon guidance genes in the developing mouse kidney. Shao A, Gearhart MD, Chan SC, Miao Z, Susztak K, Igarashi P Sci Rep. 2022 Oct 20;12(1):17586. doi: 10.1038/s41598-022-22327-5 PMID: 36266461
  11. Small hairpin inhibitory RNA delivery in the metanephric organ culture identifies long noncoding RNA Pvt1 as a modulator of cyst growth. Eckberg K, Weisser I, Buttram D, Somia N, Igarashi P, Aboudehen KS.Am J Physiol Renal Physiol. 2022 Sep 1;323(3):F335-F348. doi: 10.1152/ajprenal.00016.2022. Epub 2022 Jul 21.PMID: 35862648 Free PMC article.


Publications in 2021:

  1. Piret SE*, Attallah AA*, Gu X, Guo Y, Gujarati NA, Henein J, Zollman A, Hato T, Ma’ayan A, Revelo MP, Dickman KG, Chen CH, Shun CT, Rosenquist TA, He JC, Mallipattu SK. Loss of proximal tubular Krüppel-like factor 15 (KLF15) exacerbates kidney injury through loss of fatty acid oxidation. Kidney International (2021) 100: 1250-67. *joint first authors.
  2. Piret SE, Guo Y, Attallah AA, Horne SJ, Zollman A, Owusu D, Henein J, Sidorenko VS, Revelo MP, Hato T, Ma’ayan A, He JC, Mallipattu SK. Krüppel-like factor 6-mediated loss of BCAA catabolism contributes to kidney injury in mice and humans. PNAS (2021) 118: e2024414118.
  3. "Monitoring Hospitalized dialysis patients with COVID-19: repurposing baby monitors for patient and staff safety." Kidney Med. 2021 Jan-Feb;3(1):136-138. doi: 10.1016/j.xkme.2020.10.004. Epub 2020 Dec 10.
  4. “Endotoxemia in Critically ill patients with COVID-19.” https://www.karger.com/Article/FullText/518230#. Sobia Khan, Olena Bolotova, Haseena Sahib, Debra Foster, Sandeep Mallipattu
  5. Short- and Long-Term Recovery after Moderate/Severe AKI in Patients with and without COVID-19. Sun S, Annadi RR, Chaudhri I, Munir K, Hajagos J, Saltz J, Hoai M, Mallipattu SK, Moffitt R, Koraishy FM. Kidney360. 2021 Nov 29;3(2):242-257. doi: 10.34067/KID.0005342021. eCollection 2022 Feb 24. PMID: 35373118 Free PMC article.
  6. Podocyte-specific KLF4 is required to maintain parietal epithelial cell quiescence in the kidney. Pace JA, Bronstein R, Guo Y, Yang Y, Estrada CC, Gujarati N, Salant DJ, Haley J, Bialkowska AB, Yang VW, He JC, Mallipattu SK. Sci Adv. 2021 Sep 3;7(36):eabg6600. doi:10.1126/sciadv.abg6600. Epub 2021 Sep 3. PMID: 34516901 Free PMC article.
  7. Characterizing Long COVID: Deep Phenotype of a Complex Condition. Deer RR, Rock MA, Vasilevsky N, Carmody L, Rando H, Anzalone AJ, Basson MD, Bennett TD, Bergquist T, Boudreau EA, Bramante CT, Byrd JB, Callahan TJ, Chan LE, Chu H, Chute CG, Coleman BD, Davis HE, Gagnier J, Greene CS, Hillegass WB, Kavuluru R, Kimble WD, Koraishy FM, Köhler S, Liang C, Liu F, Liu H, Madhira V, Madlock-Brown CR, Matentzoglu N, Mazzotti DR, McMurry JA, McNair DS, Moffitt RA, Monteith TS, Parker AM, Perry MA, Pfaff E, Reese JT, Saltz J, Schuff RA, Solomonides AE, Solway J, Spratt H, Stein GS, Sule AA, Topaloglu U, Vavougios GD, Wang L, Haendel MA, Robinson PN. EBioMedicine. 2021 Dec;74:103722. doi: 10.1016/j.ebiom.2021.103722. Epub 2021 Nov 25. PMID: 34839263 Free PMC article. Review.
  8. The Association of Posttraumatic Stress Disorder With Longitudinal Change in Glomerular Filtration Rate in World Trade Center Responders. Koraishy FM, Coca SG, Cohen BE, Scherrer JF, Mann F, Kuan PF, Luft BJ, Clouston SAP. Psychosom Med. 2021 Nov-Dec 01;83(9):978-986. doi: 10.1097/PSY.0000000000000968. PMID: 34297009 Free PMC article.
  9. Challenges in defining Long COVID: Striking differences across literature, Electronic Health Records, and patient-reported information.Rando HM, Bennett TD, Byrd JB, Bramante C, Callahan TJ, Chute CG, Davis HE, Deer R, Gagnier J, Koraishy FM, Liu F, McMurry JA, Moffitt RA, Pfaff ER, Reese JT, Relevo R, Robinson PN, Saltz JH, Solomonides A, Sule A, Topaloglu U, Haendel MA. medRxiv. 2021 Mar 26:2021.03.20.21253896. doi: 10.1101/2021.03.20.21253896. Preprint. PMID: 33791733 Free PMC article.
  10. Sun S, Annadi RR, Chaudhri I, Munir K, Hajagos J, Saltz J, Hoai M, Mallipattu SK, Moffitt R, Koraishy FM. Short- and Long-Term Recovery after Moderate/Severe AKI in Patients with and without COVID-19. Kidney360. 2021 Nov 29;3(2):242-257. doi: 10.34067/KID.0005342021. eCollection 2022 Feb 24.
  11. Deer RR, Rock MA, Vasilevsky N, Carmody L, Rando H, Anzalone AJ, Basson MD, Bennett TD, Bergquist T, Boudreau EA, Bramante CT, Byrd JB, Callahan TJ, Chan LE, Chu H, Chute CG, Coleman BD, Davis HE, Gagnier J, Greene CS, Hillegass WB, Kavuluru R, Kimble WD, Koraishy FM, Köhler S, Liang C, Liu F, Liu H, Madhira V, Madlock-Brown CR, Matentzoglu N, Mazzotti DR, McMurry JA, McNair DS, Moffitt RA, Monteith TS, Parker AM, Perry MA, Pfaff E, Reese JT, Saltz J, Schuff RA, Solomonides AE, Solway J, Spratt H, Stein GS, Sule AA, Topaloglu U, Vavougios GD, Wang L, Haendel MA, Robinson PN. Characterizing Long COVID: Deep Phenotype of a Complex Condition. EBioMedicine. 2021 Dec;74:103722. doi: 10.1016/j.ebiom.2021.103722. Epub 2021 Nov 25.
  12. Koraishy FM, Coca SG, Cohen BE, Scherrer JF, Mann F, Kuan PF, Luft BJ, Clouston S. The Association of Post-Traumatic Stress Disorder with longitudinal change in Glomerular Filtration Rate in World Trade Center responders. Psychosom Med. 2021 Jul 7. doi: 10.1097/PSY.0000000000000968. Online ahead of print.
  13. Bennett TD, Moffitt RA, Hajagos JG, Amor B, Anand A, Bissell MM, Bradwell KR, Bremer C, Byrd JB, Denham A, DeWitt PE, Gabriel D, Garibaldi BT, Girvin AT, Guinney J, Hill EL, Hong SS, Jimenez H, Kavuluru R, Kostka K, Lehmann HP, Levitt E, Mallipattu SK, Manna A, McMurry JA, Morris M, Muschelli J, Neumann AJ, Palchuk MB, Pfaff ER, Qian Z, Qureshi N, Russell S, Spratt H, Walden A, Williams AE, Wooldridge JT, Yoo YJ, Zhang XT, Zhu RL, Austin CP, Saltz JH, Gersing KR, Haendel MA, Chute CG; National COVID Cohort Collaborative (N3C) Consortium. Clinical Characterization and Prediction of Clinical Severity of SARS-CoV-2 Infection Among US Adults Using Data From the US National COVID Cohort Collaborative. JAMA Netw Open. 2021 Jul 1;4(7):e2116901. doi: 10.1001/jamanetworkopen.2021.16901.
  14. Rando HM, Bennett TD, Byrd JB, Bramante C, Callahan TJ, Chute CG, Davis HE, Deer R, Gagnier J, Koraishy FM, Liu F, McMurry JA, Moffitt RA, Pfaff ER, Reese JT, Relevo R, Robinson PN, Saltz JH, Solomonides A, Sule A, Topaloglu U, Haendel MA. Challenges in defining Long COVID: Striking differences across literature, Electronic Health Records, and patient-reported information. medRxiv. 2021 Mar 26:2021.03.20.21253896. doi: 10.1101/2021.03.20.21253896. Preprint.
  15. Agrawal S*, He JC, Tharaux PL. Nuclear receptors in podocyte biology and glomerular disease. Nat Rev Nephrol. 2021 Mar;17(3):185-204. doi: 10.1038/s41581-020-00339-6. Review. PMID: 32943753. *Corresponding author

Publications in 2020: